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74 <h2 class="title">A</h2>
76 <dt><a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractClusterMatcher</span></a> - Class in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
78 <div class="block">Base class for classes that search a traffic trace for sequences of packets that "belong to" a given cluster (in
79 other words, classes that attempt to classify traffic as pertaining to a given cluster).</div>
81 <dt><a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection"><span class="typeNameLink">AbstractSignatureDetector</span></a> - Class in <a href="../edu/uci/iotproject/detection/package-summary.html">edu.uci.iotproject.detection</a></dt>
83 <div class="block">TODO add class documentation.</div>
85 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html#AbstractSignatureDetector-java.util.List-">AbstractSignatureDetector(List<List<List<PcapPacket>>>)</a></span> - Constructor for class edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/AbstractSignatureDetector.html" title="class in edu.uci.iotproject.detection">AbstractSignatureDetector</a></dt>
87 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addFinPacket-org.pcap4j.core.PcapPacket-">addFinPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
89 <div class="block">Adds a TCP FIN packet to the list of TCP FIN packets associated with this conversation.</div>
91 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addFlowObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowObserver-">addFlowObserver(Layer2FlowObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
93 <div class="block">Register as an observer of this flow.</div>
95 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html#addObserver-edu.uci.iotproject.detection.ClusterMatcherObserver-">addObserver(ClusterMatcherObserver)</a></span> - Method in class edu.uci.iotproject.detection.<a href="../edu/uci/iotproject/detection/AbstractClusterMatcher.html" title="class in edu.uci.iotproject.detection">AbstractClusterMatcher</a></dt>
97 <div class="block">Register for callbacks from this cluster matcher.</div>
99 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html#addObserver-edu.uci.iotproject.detection.SignatureDetectorObserver-">addObserver(SignatureDetectorObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer2.<a href="../edu/uci/iotproject/detection/layer2/Layer2SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer2">Layer2SignatureDetector</a></dt>
101 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html#addObserver-edu.uci.iotproject.detection.layer3.Layer3SignatureDetector.SignatureDetectionObserver-">addObserver(Layer3SignatureDetector.SignatureDetectionObserver)</a></span> - Method in class edu.uci.iotproject.detection.layer3.<a href="../edu/uci/iotproject/detection/layer3/Layer3SignatureDetector.html" title="class in edu.uci.iotproject.detection.layer3">Layer3SignatureDetector</a></dt>
103 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html#addObserver-edu.uci.iotproject.trafficreassembly.layer2.Layer2FlowReassemblerObserver-">addObserver(Layer2FlowReassemblerObserver)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2FlowReassembler.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2FlowReassembler</a></dt>
105 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html#addPacket-org.pcap4j.core.PcapPacket-">addPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer2.<a href="../edu/uci/iotproject/trafficreassembly/layer2/Layer2Flow.html" title="class in edu.uci.iotproject.trafficreassembly.layer2">Layer2Flow</a></dt>
107 <div class="block">Add a packet to this flow.</div>
109 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addPacket-org.pcap4j.core.PcapPacket-boolean-">addPacket(PcapPacket, boolean)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
111 <div class="block">Add a packet to the list of packets associated with this conversation.</div>
113 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addRstPacket-org.pcap4j.core.PcapPacket-">addRstPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
115 <div class="block">Add a TCP segment for which the RST flag is set to this <code>Conversation</code>.</div>
117 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#addSynPacket-org.pcap4j.core.PcapPacket-">addSynPacket(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
119 <div class="block">Records a TCP SYN packet as pertaining to this conversation (adds it to the the internal list).</div>
121 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#alignmentCost-T-T-">alignmentCost(T, T)</a></span> - Method in class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></dt>
123 <div class="block">Calculate the cost of aligning <code>item1</code> with <code>item2</code>.</div>
125 <dt><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><span class="typeNameLink">AlignmentPricer</span></a><<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="type parameter in AlignmentPricer">T</a>> - Class in <a href="../edu/uci/iotproject/comparison/seqalignment/package-summary.html">edu.uci.iotproject.comparison.seqalignment</a></dt>
127 <div class="block">Provides a generic implementation for the calculation of the cost of aligning two elements of a sequence as part of
128 the sequence alignment algorithm (the algorithm is implemented in <a href="../edu/uci/iotproject/comparison/seqalignment/SequenceAlignment.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>SequenceAlignment</code></a>).</div>
130 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html#AlignmentPricer-java.util.function.ToIntBiFunction-java.util.function.ToIntFunction-">AlignmentPricer(ToIntBiFunction<T, T>, ToIntFunction<T>)</a></span> - Constructor for class edu.uci.iotproject.comparison.seqalignment.<a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment">AlignmentPricer</a></dt>
132 <div class="block">Constructs a new <a href="../edu/uci/iotproject/comparison/seqalignment/AlignmentPricer.html" title="class in edu.uci.iotproject.comparison.seqalignment"><code>AlignmentPricer</code></a>.</div>
134 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html#ameAlignedWithNameShouldBe2--">ameAlignedWithNameShouldBe2()</a></span> - Method in class edu.uci.iotproject.test.<a href="../edu/uci/iotproject/test/SequenceAlignmentTest.html" title="class in edu.uci.iotproject.test">SequenceAlignmentTest</a></dt>
136 <dt><span class="memberNameLink"><a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html#attemptAcknowledgementOfFin-org.pcap4j.core.PcapPacket-">attemptAcknowledgementOfFin(PcapPacket)</a></span> - Method in class edu.uci.iotproject.trafficreassembly.layer3.<a href="../edu/uci/iotproject/trafficreassembly/layer3/Conversation.html" title="class in edu.uci.iotproject.trafficreassembly.layer3">Conversation</a></dt>
138 <div class="block">Attempt to ACK any FIN packets held by this conversation.</div>
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